Ph.D. student at Binghamton University, NY. Working on System Dynamics modeling for infectious disease like Ebola and Lyme disease
Rod MacDonald is the director of the Initiative for System Dynamics in the Public Sector located at Rockefeller College of Public Affairs and Policy at the University at Albany. He earned his Ph.D. in Public Administration and Policy from the University at Albany’s Rockefeller College of Public Affairs and Policy where he specialized in the development of computer simulation models as decision support tools. He has used the tools and techniques of system dynamics computer simulation modeling to analyze deposit insurance issues for the banking industry and to address problems in the delivery of mental health services, fleet maintenance, supply chain management, Social Security disability benefits, DWI recidivism, the flow criminals through the criminal justice system, HIV/AIDS, and traffic safety issues. He also started and ran MindWalk Consulting for seven years prior to becoming the director the Initiative for System Dynamics in the Public Sector. Prior to starting MindWalk Consulting Mr. MacDonald administered a famine relief program in Botswana, Africa (1985-1988), has developed low income housing projects in New York State’s Capital Region (1988-1991), and provided technical assistance on management issues to nonprofits in New York State (1991-1993).
Background: The interaction of several sociocultural and environmental factors during an epidemic crisis leads to behavioral responses that consequently make the crisis control a complex problem.
Methods: The system dynamics approach has been adopted to study the relationships between spread of disease, public attention, situational awareness, and community’s response to the Ebola epidemic.
Results: In developing different simulation models to capture the trend of death and incidence data from the World Health Organization for the Ebola outbreak, the final model has the best fit to the historical trends. Results demonstrate that the increase of quarantining rate over time due to increase in situational awareness and performing safe burials had a significant impact on the control of epidemic. However, public attention did not play a significant role.
Conclusion: The best fit to historical data are achieved when behavioral factors specific to West Africa like studying the Situational Awareness and Public Attention are included in the model. However, by ignoring the sociocultural factors, the model is not able to represent the reality; therefore, in the case of any epidemics, it is necessary that all the parties and community members find the most significant behavioral factors that can curb the epidemic.
The 2014 Ebola outbreak was the deadliest in history affecting three countries in West Africa. The virus spreads through direct contact with body fluids of infected individuals, or objects that have been contaminated by an infected person. The Ebola virus is considered a behavioral disease by USAID (2015)
Some studies show the effect of different behavioral factors and their positive or negative impacts on the spread of Ebola. According to Pruyt et al. (2015)
Several studies discuss strategies and interventions to fight Ebola. According to Gimm and Nichols (2015)
Furthermore, there are many difficulties during the process of quarantining people in Africa according to Kutalek et al. (2015)
Simulation models are extremely helpful for testing different policy scenarios during such crises (Merler et al., 2015)
A simulation model that fits historical data trends on the number of deaths and incidence, while capturing the social and behavioral factors, can help with analyzing various policy scenarios prior to implementation, and decrease costs of unintended consequences. Overall, considering that the Ebola crisis is a complex problem due to the interaction of several sociocultural, and environmental factors over time, a system dynamics (SD) approach provides a promising framework for studying this problem. SD simulation models have also been applied to epidemics and other complex public health issues including eradication of polio (Thompson et al., 2015)
In the following section, some background information for the modeling process is discussed and the key historical trends of the spread of Ebola are presented. Later, the causal loop diagram is provided that shows the important causal relationships between different key factors, which had a significant influence on public’s situational awareness and attention towards the epidemic and consequently the spread of Ebola. Also, the corresponding causal structure that represents the trends observed from tweet data is discussed to understand the relationship between the spread of Ebola in West Africa and behavioral response to disease among the population. Then in the simulation section, the final model, calibration results and fitness measures with historical trends is thoroughly described. Finally, the conclusion with a summary of the main insights of our research and future research directions will be discussed.
In this paper, a system dynamics (SD) approach is used to study the impact of social and behavioral factors on the spread of Ebola, and also to identify how people’s perceptions about the situation can have different effects on controlling the outbreak. System dynamics approach focuses on understanding the relationship between the structure of a system and the resulting dynamic behaviors generated through multiple interacting feedback loops (Sterman, 2000)
In order to develop the system dynamics model, we identify the main causal forces that lead to the epidemic and illustrate within the Causal Loop Diagram (CLD) (Figure 2). The CLD demonstrates the major feedback loops that we hypothesize are responsible for the growth and decline of the number of infected and death from Ebola. However, a CLD is not a simulation model. Any system dynamics simulation model can be expressed as a system of differential equations. When using software such as vensim (Ventana System, 2014)
Stock variables represent accumulations and define the state of the system (Rectangles in Figure 3). We define stock variables by integrating its net flow rate that is the difference between the inflow and the outflow rates of a process, over a period of time (Sterman, 2000)
The simulation results of the model should replicate the dynamics of the 2014 West African Ebola outbreak. We used the WHO situation reports (WHO, 2015a)
In Figure 1, a trend line has been fitted to the number of tweets for Ebola. The trend shows that tweets increased rapidly while Ebola was spreading, but then tweets slowed down after a 4-months period. In November 2014 tweets started dropping from 88,000 to 6,500 tweets in Feb 2015. This drop in number reflects that some underlying reinforcing mechanism, led to exponential growth of tweets on Ebola, and then later some balancing mechanism slowed that growth. After a while, the tweets, or concerns and public attention has dropped dramatically.
In the first phase of our modeling process, a qualitative model called a Causal Loop Diagram (CLD) (Sterman, 2000)
Furthermore, the impact of Situational Awareness on reducing the infection rate can be visualized in feedback loops B2 and B3. ‘Situational Awareness (SA)’ was originally defined to explain the jet pilot’s need to have a continuous awareness about his environment during flight (Stanton, Chambers, and Piggott, 2001)
During the Ebola epidemic, the Situational Awareness (SA) of people increases when the number of deaths reported increases. Also, training people about the disease and prevention approaches by community members and WHO (Abramowitz et al., 2015)
In addition, as the number of deaths reported increases, fear among the population and consequently public attention towards Ebola increases. As people’s attention grows, they will avoid going out in public, which will decrease the contact rate and consequently reduce the spread of the disease (Loop B4). Furthermore, during the epidemic, a massive amount of news was broadcasted regarding Ebola and everyone was talking about Ebola, its symptoms, and strategies to avoid getting infected. Some media coverage was releasing news with misinformation on Ebola or made the spread of disease sound too dramatic without providing clear information on prevention and dealing with the disease; like the possibility of transmission of disease through the air (Rahmandad and Sabounchi, 2012)
In summary, based upon the diagram in Figure 2, our hypothesis is that during the first months of the outbreak, public attention towards Ebola was spreading due to uncertainty in news reporting, fear among the population, and due to an incorrect perception of people about Ebola. However, the public attention to new issues, such as the Ebola outbreak, has a trend that increases exponentially followed by a sudden fall; this pattern is common and is referred to as issue fatigue (Waldherr, 2014)
Loop's elements
Loop Name
Components
R1
Getting infected => Number of infected
R2
Getting infected => Number of infected => Number of death => Number of unsafe funerals
R3
Public attention towards Ebola => Fear among the population => Rate of attention growth
R4
Rate of attention growth => Demand for media coverage on Ebola => Media Coverage on Ebola
R5
Rate of attention growth => Demand for media coverage on Ebola => Media Coverage on Ebola => Misinformation => Uncertainty about Disease => Fear among the population
B1
Getting infected => Number of infected => Susceptible population
B2
Situational Awareness => Number of unsafe funerals => Getting infected => Number of infected => Number of death => Number of death reported => Perceived number of death
B3
Situational Awareness => Quarantining / Hospitalizing Rate => Getting infected => Number of infected => Number of death => Number of death reported => Perceived number of death
B4
Getting infected => Number of infected => Number of death => Number of death reported => Fear among the population => Rate of attention growth => Public attention towards Ebola => Avoidance of public space because of disease spread => Contact rate
B5
Situational Awareness => Number of unsafe funerals (Quarantining / Hospitalizing Rate) => Getting infected => Number of infected => Interventions for stopping disease => Efforts of related organizations to communicate with the public about Ebola => Knowledge about Safe Burial
B6
Situational Awareness => Number of unsafe funerals (Quarantining / Hospitalizing Rate) => Getting infected => Number of infected => Interventions for stopping disease => Efforts of related organizations to communicate with the public about Ebola => Knowledge about Quarantining
B7
Public attention towards Ebola => Issue Fatigue => Attention towards other topics
In our modeling approach, system behavior is described based on the underlying causal relationships and feedback structure. In order to test our dynamic hypothesis outlined in the causal loop diagram in explaining the dynamic behavior trends of Ebola deaths and cases, a simulation model is developed. The model is an extended variation of the Susceptible-Infected-Recovered (SIR) model (Kermack and McKendrick, 1927)
Six different simulation models were developed, starting from the basic SIR model (Sterman, 2000)
Models development process
Model
Stocks
Descriptions
1 (SIR Model)
Susceptible – Infected - Recovered
Simple SIR model with constant contact rate over the time
2
Added Stock: Death
Capturing the death rate and considering the reduction of contact rate over the time
3
Added Stock: Quarantined
Investigating the influence of quarantining the infected on reducing the death rate
4
Added Stock: Perception of Death
Capturing the increase of situational awareness which leads to more safe burials
5
Added Stocks: Asymptomatic and Symptomatic
Capturing the incubation time to separate the symptomatic individuals from asymptomatics, and more precisely define the infection rate
6 (Final Model)
Added Stock: Public Attention
Studying the influence of public attention on contact rate by incorporating twitter data trends
The final model consists of seven population stocks including Susceptible, Infected that are Asymptomatic and Symptomatic, Quarantined and Hospitalized, Recovered and the Dead that are either buried or yet in the stage of getting buried (See Figure 3).
In this model, the effect of tweets or public attention on contact rate has been added to the model. Public attention increases according to public information about the death toll (See Figure 3). However, as death rate declines, public attention will also drop; consequently, its corresponding effect on tweets has the same behavior. Also, Public Attention influences the contact rate between the infected and susceptible population. As public attention increases, contact rates decline. But, after a while people start to have their routine life and contact rate increases to its original value following the trend of public attention.
In the model, Situational Awareness (SA) is defined based on the ratio of death toll to a baseline value of ‘Minimum Number of Death to Get Noticed’. Situational Awareness (SA) modifies the traditional and unsafe funerals. When people’s SA increased, and they learned how to perform safe burials, their behavior changed and they started to avoid having unsafe rituals. Furthermore, higher situational awareness increases the willingness to get quarantined/hospitalized that is represented by the parameter ‘quarantine fractional change’. The simulated results show that there is a delay of 190 days from the beginning of the outbreak before Situational Awareness (SA) starts to increase. This concept can be explained by the concept of Normalcy Bias that makes people ignore or underestimate the disaster’s effects and it can happen for regular people and even policy makers (Moore, 2014)
In order to define the parameters in the simulation model, various data sources are used including literature or reports published for the Ebola outbreaks. On the other hand, for some model parameters that are critical in determining model behavior only a reasonable range of values are reported in the literature, or no data sources are found. These parameters are determined by calibration (Table 3).
Sources for Defining Model Parameters
Determined based on Available Data
Value
Determined by Calibration
Value
Average Recovery Time
7 Days
Infectivity
0.0702
Incubation Time
12.62 Days
Initial Susceptible
10,000,000 People
Initial % of people who were burying unsafe
76%
Average Time to Perceive Death
90 Days
Average Recovery Time From Quarantine
7 Days
Minimum Number of Death to Get Noticed
113 Deaths
Average Time to Bury
8.82 Days
Contact Rate
6 Contacts/Day
Average Disinfection Time
2 Days
Some model parameters are not precisely defined but various literature reports a reasonable range of values. For example, according to Dowell et al. (1999)
However, due to the dispersion of Ebola in different countries, the parameters that we are interested in using in the model may vary among these countries. For instance, according to Rivers et al. (2014)
Differences between parameter's value in Liberia and Sierra Leone
Parameters
Liberia
Sierra Leone
Contact Rate (Community)
0.16
0.128
Contact Rate (Hospital)
0.062
0.08
Contact Rate (Funeral)
0.489
0.111
Incubation Period
12 Days
10 Days
Time from Hospitalization to Recovery
15.88 Days
15.88 Days
Time from Hospitalization to Death
10.07 Days
6.26 Days
Time until Hospitalization
3.24 Days
4.12 Days
The simulation model is calibrated against data collected on the number of deaths and Ebola cases from the WHO situational reports (WHO, 2015a)
The final model can reasonably well replicate the time data series available on the number of death and infected cases (See Figure 4). Since the number of dead is calculated separately comparing to the original SIR model, so the results are precise in representing numbers on total recovered or died. Also, the final model captures the social and behavioral factors that had a significant influence on curbing the outbreak including the change of social contacts during the epidemic, the process of quarantining infected people, and the asymptomatic period that people do not show symptoms which are the essential parts in order to study the Ebola crisis. Therefore, the final model fits our purpose of representing the events that occurred during the Ebola outbreak.
In order to evaluate the various versions of simulation models developed and how closely they represent the recent Ebola epidemic, the RMSE of Deaths and Cases RMSE are calculated based on the formula RMSE =
where Xm indicates simulated values and Xd the data values.
In the final model, RMSE of deaths is 293 and is much lower than the original SIR model that has an RMSE of 1043. Also regarding the number of infected cases, final model has a RMSE of 623, while the original SIR model has 6843.
Furthermore, the final simulation model (Figure 3) has a much lower bias (0.165 for deaths and 0.06598 for infected cases) and variation (0.1282 for deaths and 0.0843 for infected cases) in comparison with other versions of models developed based on the original SIR model. For example, the original SIR model has bias value of 0.3214, and 0.4626 for deaths and infected cases respectively, and variations of 0.5589 and 0.5339 for deaths and infected cases. In conclusion, the final simulation model has the best fit in comparison with the original SIR model, which lacks behavioral and sociocultural factors, and also in comparison with the other versions of the model, final model has better fit and it is illustrating the real story in more details.
It is vital to consider how the behavior of communities plays an important role in the spread of Ebola in West Africa. This extends not only to the disease itself but also to the contagion of irrational behaviors. Not only the public, but also high ranking officials, scientists, and even policy makers are at risk for presumptive and consequently dangerous behavior; therefore, it is necessary to combine physical disease spread along with behavioral practices that hinder or spread the disease. As the United Nations head of the Ebola mission (Ismail Ould Cheikh Ahmed) attested, combatting the Ebola outbreak was slowed by both “traditional practices” and “lack of knowledge” (Ohlheiser, 2015)
The system dynamics approach is a very helpful tool in grasping the whole picture and helping key actors better understand and act upon the reality and facts within the chaotic behavioral decisions and their impact on an epidemic. Overall, response to any infectious disease such as Ebola requires constant monitoring and adaptability. Dynamic adaptability is a feature of our model, which gets away from presumptions as we strive to create a working baseline for future policy implementation modeling as well as retrospective impact assessment, particularly with regard to social and behavioral factors.
In this paper, the impact of public attention and awareness in dealing with epidemics has been studied and several system dynamics simulation models have been developed. The best model according to its ability to capture a realistic slice of reality has been provided, which is capable of generating the observed data from WHO (WHO, 2015a)
In the future, we plan to use our best simulation model to test different policy scenarios in leveraging public fear and awareness to deal with the spread of fatal disease such as Ebola. For instance, we can study the effects of Doctors Without Borders interventions on increasing the knowledge of people and stopping the disease, to see if it truly had helped to stop Ebola outbreak in infected countries or not. Also, another direction for the future work is to further refine the model by capturing the spread of disease in the three West African countries separately and compare and contrast their disease management approaches.
In addition, system dynamics modeling approach can also be adopted to model other diseases outbreaks, but a specific model constructed for a specific disease cannot be used as is to predict other diseases, because each model contains disease-specific epidemiological, social and cultural factors. The model developed in this paper can be used in general for other contagious diseases if we are dealing with an outbreak in communities that follow similar social and cultural practices. However, we need to refine parameter values to correspond with the characteristics of the new outbreak. This requires further calibration of the model against data trends of reported infected and death numbers and also posted tweets that represent dynamics of public attention and situational awareness for the new disease outbreak.
Moreover, our current analysis of trends on tweet data on Ebola is at an aggregate level that was publicly available from a third party (Symplur, 2015)
Furthermore, by collecting field data and conducting interviews and focus group sessions with various stakeholders and affected individuals in both urban and rural communities and collecting data about their experiences from the Ebola epidemic, we will have a more precise comprehension about the sociocultural and environmental factors and further refine our model. Further, we hope to mobilize future models for the predictive potential to enhance outbreak preparedness. Such models could be used to help educate the public and key actors to create a broader awareness and collaboratively create effective protocols and disaster plans that minimize disease casualty.
All the data that have been used in this study are from publicly available sources like WHO, and Symplur websites. We have referenced these sources in the manuscript. The data of Figure 1 are from Symplur, which the authors used to validate the simulation output. Total reported suspected, probable, and confirmed cases in Guinea, Liberia, and Sierra Leone have been reported by CDC, which are provided in WHO situation reports, http://www.cdc.gov/vhf/ebola/outbreaks/2014-west-africa/cumulative-cases-graphs.html. http://apps.who.int/ebola/ebola-situation-reports.
We have uploaded all these data to the Figshare repository: https://figshare.com/s/a6ac2c9cc4ec2c6dc65d (DOI: 10.6084/m9.figshare.3750774).
Nasim Sabounchi (sabounchi@binghamton.edu) and Nasser Sharareh (nsharar1@binghamton.edu)
The authors have declared that no competing interests exist.
Ph.D. student at Binghamton University, NY. Working on System Dynamics modeling for infectious disease like Ebola and Lyme disease
We have created a user-friendly interface that people can play with our simulation model and apply their own changes to the model. This tool is available at: forio.com/app/nsharar1/ebola-crisis
Ph.D. student at Binghamton University, NY. Working on System Dynamics modeling for infectious disease like Ebola and Lyme disease
Thank you for your comment. Please email me for further collaborations (nsharar1@binghamton.edu), or please give me your email address. Thank you, Nasser Sharareh,
If you are going to pursue this topic of behavior in the context of biodisaster, I have a large database available. Part of this is now posted on a public website at http://parademic.typepad.com. The previous 5 years are behind a firewall at the APAN Pandemic and Infectious Disease Working Group, but I still have access. Robert Blew