Sumiko Mekaru, DVM, PhD, MPVM, MLIS is a veterinarian and epidemiologist. Her doctoral research examined environmental factors contributing to infectious disease outbreak. As a Research Fellow at Boston Children’s Hospital, she studies digital disease detection, One Health, and emerging infectious diseases while managing several of HealthMap’s grants and partnerships.
Associate Professor of Pediatrics
The West Africa Ebola virus epidemic now appears to be coming to an end. In the proposed model, we simulate changes in population behavior that help to explain the observed transmission dynamics. We introduce an EVD transmission model accompanied by a model of social mobilization. The model was fit to Lofa County, Liberia through October 2014, using weekly counts of new cases reported by the US CDC. In simulation studies, we analyze the dynamics of the disease transmission with and without population behavior change, given the availability of beds in Ebola treatment units (ETUs) estimated from observed data. Only the model scenario that included individuals' behavioral change achieved a good fit to the observed case counts. Although the capacity of the Lofa County ETUs greatly increased in mid-August, our simulations show that the expansion was insufficient to alone control the outbreak. Modeling the entire outbreak without considering behavior change fit the data poorly, and extrapolating from early data without taking behavioral changes into account led to a prediction of exponential outbreak growth, contrary to the observed decline. Education and awareness-induced behavior change in the population was instrumental in curtailing the Ebola outbreak in Lofa County and is likely playing an important role in stopping the West Africa epidemic altogether.
It has long been recognized that human behavior can have a dramatic influence on the spread of infectious disease
The 2014 West Africa EVD epidemic is the largest ever recorded, with 25,826 cases and 10,704 deaths reported by April 12, 2015
We fit the model to weekly case counts from Lofa County, Liberia, in order to analyze the importance of both social mobilization efforts and the expansion of ETUs in containing the spread of EVD. Lofa County is located in northern Liberia and is a largely rural area, historically known as Liberia's bread basket
The outbreak began in late-May and worsened through mid-August, when the number of new cases per week began to decline. Due to reclassification of suspected and probable cases, the reported cases per week do not always correspond with the reported cumulative cases.
By modeling the spread of the disease and analyzing the effect of changes in population compliance with control measures, we show that the observed ETU capacity in Lofa County would have been insufficient to stop the disease outbreak had population behavior not changed. Our simulations suggest that behavioral change is a key reason for the slowing of the Lofa County outbreak. We discuss how this conclusion can affect policy for EVD containment.
We implement an EVD transmission model
The EVD transmission model is an extension of the standard susceptible-infected-recovered model
State
Description
S
susceptible to EVD infection
E
exposed to EVD but not yet infectious
I
infectious and in the community
H
infectious and isolated in an ETU
FC
fatality that is unburied and in the community
FB
fatality that has been buried or cremated
R
recovered and immune to reinfection
As in the standard SEIR model, our model includes susceptible, exposed, infected and recovered stages. To account for the particular dynamics of EVD, our model also includes a hospitalized stage and buried and unburied fatality stages.
Individuals become exposed to EVD via contact with infectious individuals in the community (I) or with the bodies of the deceased (FC). Thus, for individuals i and j, if i and j are neighbors on the transmission network and Xj(t) ∈ {I, FC} and Xi(t) = S:
Under the baseline condition in which behavior change is not assumed, pi(t) = p0. When behavior change is considered, pi(t) decreases as the population's awareness increases. We selected the same exposure probability for infected individuals and unburied fatalities, due to the lack of conclusive studies on the comparative risk of transmission. We assumed no risk of transmission once the patient had been isolated in an ETU (H) in order to maximize the efficacy of ETU expansion. We will describe the effects of awareness on transmission in detail in later sections.
All exposed individuals progress to the infectious stage following the incubation period. If individual i is exposed at day t, then
where TiE is the incubation period for individual i, which is drawn from the incubation times distribution (Figure 5). We used an incubation time distribution that was fit to observed incubation times from prior EVD outbreaks and has been used in other modeling efforts
Isolation of infected individuals is one of the key factors in EVD containment. We assume that two factors determine whether or not an infected individual will be hospitalized: (1) the individual's willingness to seek treatment for EVD and (2) the availability of such treatment. When there are shortages of ETU beds for those seeking treatment, individuals are selected randomly to fill the ETUs to capacity.
Once infected, individuals eventually either recover or die from EVD. Let Qi define whether individual i will recover or die. Then,
We assume that the case-fatality rate among hospitalized individuals is not different than that among infectious individuals in the community, though we note that hospitalized patients may have a slightly increased probability of survival
Both the length of time from symptom onset to recovery and from symptom onset to death are modeled using gamma distributions fit to data collected by WHO
If Qi = 1,
where TiF, the number of days between symptom onset and death for individual i, is drawn from the time until death distribution.
Otherwise, if Qi = 0,
where TiR, the number of days between symptom onset and recovery for individual i, is drawn from the time until recovery distribution.
Recovered individuals (R) become immune to reinfection and can no longer transmit the disease. Unburied fatalities (FC) continue to transmit infection until safely buried or cremated (FB). We assume that patients who die in ETUs are safely and quickly buried, and pass immediately from the hospitalized (H) to the buried (FB) stage. Individuals who die outside of ETUs are assumed to be buried at most TB days after death.
We overlay the EVD transmission and case isolation model with a model of social mobilization, in which social mobilization programs reach community members and increase their awareness of EVD. Community members then communicate about the disease, arriving at a consensus level of awareness. We assume that increased awareness decreases: (1) the delay between symptom onset and presentation at a treatment center, (2) the delay between death and burial and (3) the transmission probability.
Let Yi(t) ∈ [0, 1] denote individual i's awareness of and willingness to seek treatment for EVD at time t. An individual with an awareness of 1 will seek treatment immediately; an individual with an awareness of 0 will not seek treatment. The initial level of awareness in the community is Y0. That is,
In simulations in which there is no social mobilization, awareness is fixed at Y0. In simulations in which social mobilization takes place, awareness increases over time. Social mobilization is modeled as follows. Every day each individual's awareness level is updated to the average awareness of the community, following a social mobilization effort described by the function fM. Thus,
where n is the size of the population and where
where Mj(t) ∈ {0,1}. We assume that the social mobilization campaign begins on day TM. (In Lofa County, TM = 42
The delays between symptom onset and treatment seeking and between death in the community and burial are determined probabilistically, according to the affected individual's awareness. As awareness increases, the probability of isolation in an ETU increases, as does the probability of being quickly and safely buried. Assuming that there is space available in the ETU and Xi(t) = I, then:
Similarly, if Xi(t) = FC, then:
We also consider reductions in the transmission resulting from preventative measures taken within the community and within households, such as self-isolation and avoidance of public places
and where α ∈ [0, 1] is the maximum reduction in the per-contact exposure probability resulting from awareness of the disease.
The model was fit to weekly EVD cases in Lofa County between the week ending June 16, 2014 and the week ending November 1, 2014, compiled by the US CDC
We estimated the capacity of the Lofa County ETUs on a given day as the maximum number of patients actually reported in ETUs prior to or on that day. We derived this estimate based on two assumptions: (1) the capacity of an ETU is greater than the number of beds in the ETU, because patients can share beds or be placed on the floor, and (2) ETUs were likely operating at or near capacity during the early stages of the outbreak.
We used a small-world network
Since the reported cases of EVD represent only a fraction of the total number of cases
We fit the model by performing a greedy search of the parameter space, with random restarts. One-thousand instances of the model were executed for each combination of parameters. All simulations were initialized with a single infected individual on May 23, 2014
where week 1 is the week ending June 16, 2014 (the first week included in the CDC data) and Wmax is the last week fit to data.
Parameter
Description
Value
Reference
TiE
days from exposure until symptom onset for individual i
discrete distribution derived from data
qF
case-fatality rate
0.708
TiR
days from symptom onset until recovery for individual i
TiR ~Gamma(k = 6.37, θ = 2.58)
TiF
days from symptom onset until death for individual i
TiF ~Gamma(k = 1.22, θ = 6.17)
TB
days between death and burial
2
TM
days until social mobilization begins to affect awareness
42
Parameter
Description
Range with Behavior Change
Range without Behavior Change
p0
baseline per-contact probability of exposure
0.180, 0.185, ... ,0.340
0.180, 0.185, ... , 0.340
α
maximum reduction of p0 resulting from awareness
0.0, 0.1, ... , 0.8
0.0
Y0
initial level of awareness in the community
0.10, 0.15, ... , 0.30
0.10, 0.15, ..., 0.30
η
daily probability of being reached by social mobilization
0.00, 0.01, ... , 0.10
0.0
There was a remarkable decrease in the rate of EVD transmission from the first months of the Lofa County outbreak to the later months. Starting in mid-August, the rate of transmission slowed substantially (Figure 1). We designed a set of three scenarios to understand the role of social mobilization efforts in helping to contain the spread of EVD. In all scenarios, ETUs were expanded to the levels actually observed in Lofa County. Behavioral change in the population was considered in only one of the scenarios.
Scenario 1 parameters were selected to minimize the MAE for weeks ending during the months of June and July (Wmax = 7). The behavior change parameters, α and η, were fixed to 0, indicating no change in population behavior. Since this scenario fits to early epidemic data (prior to the change in behaviors), it allows us to predict the course of the outbreak if behavior change had never taken place. The results of this scenario should be interpreted with caution, however, as they are derived from parameters fit to a relatively small amount of data.
Scenario 2 parameters were selected to model the outbreak through the end of October by minimizing the MAE for the months June through October (Wmax= 21). This scenario tested if model parameters could be found that would accurately model the course of the outbreak, assuming no behavior change in the population.
In Scenario 3, we added effects for social mobilization efforts (α ≥ 0 and η > 0). We selected parameters that minimized the MAE for the months June through October (Wmax= 21). Scenario 3 tested if a good fit to the observed weekly cases could be obtained, if behavioral changes were taken into account.
The results of the simulations show that fitting to early epidemic data without considering behavioral change results in a significant overestimation of the size of the outbreak; modeling the entire outbreak without considering behavioral change provides a poor overall fit; and the introduction of behavioral changes to the model provides a good fit to the observed data (Figure 4).
In Scenario 1 and Scenario 2, the capacity of the Lofa County ETUs was increased, as actually occurred, but no behavior change took place in the population. Scenario 1 fit the weekly case counts in June and July and extrapolated the trend to future months. Scenario 1 substantially overestimated the size of the outbreak, predicting 13,411 or more reported cases by November 1 in 50% of simulations. Scenario 2 fit the weekly cases for June through October. A poor fit to the observed cases was obtained. Scenario 3 took into account gradually increasing awareness of EVD in the community, in addition to the expansion of the Lofa County ETUs, achieving an excellent fit to the observed weekly cases.
For Scenario 1, we achieved a good model fit to the observed cumulative cases from June through July, with a MAE of 9.9 cases during that period (Figure 4). However, the simulations predicted an increasingly worsening outbreak in September and October, instead of the improvements that were actually seen (Figure 4). Of 1000 simulations, 50% predicted 13,411 or more reported cases by November 1. In 65% of simulations, 5000 or more reported cases were predicted by November 1. In reality, no new cases of EVD were reported in Lofa County in the 3 weeks ending November 22
Scenario 2 simulations were designed to test if the Lofa County EVD outbreak could be adequately modeled without accounting for behavioral changes. Simulations provided a poor fit to the observed weekly cases (Figure 4). The weekly cases were underestimated from June through September and overestimated in late October. In October, the simulated outbreaks were worsening, rather than improving as actually observed. The outbreak ended by November 22 in 42% of follow-up simulations.
The Scenario 3 simulations, which considered behavior change resulting from increased awareness, provided the best fit to the observed weekly cases (Figure 4). The median number of new cases reported during the 21 weeks ending on November 1 in Scenario 3 simulations was 835, which is close to the observed value in the CDC data, 912
Our findings suggest that behavioral change in the population of Lofa County was instrumental in bringing the outbreak under control. Under the counter-factual scenario in which we assumed that no behavioral change took place, the increase in capacity of the Lofa County ETUs in mid-August was insufficient to bring the outbreak under control in most of our simulations. Instead, the outbreak continued to spread, infecting over 13,000 people in most simulations by November 1, 2014. We therefore believe that behavioral change resulting from a successful social mobilization campaign may have averted hundreds, if not thousands, of EVD cases in Lofa County.
Based on our case study of Lofa County, we believe that behavioral change is playing a significant role in slowing the spread of disease and that the observed dynamics of the outbreak cannot be fully explained by the increase in treatment capacity alone. It remains to be seen whether incorporating behavioral change into predictive models will be feasible, given the lack of availability of high-quality data on human behaviors. Nevertheless, models that do not take into account behavioral effects will likely produce overly pessimistic predictions, especially when extrapolating from early epidemic data, as did our Scenario 1 model. During the initial growth stage of the outbreak, there was low awareness of prevention methods, resulting in a higher per-contact transmission probability than was observed at later points in the outbreak, when available preventative measures were already in place.
Our model results for Lofa County support continued focus on social mobilization as a means to combat the spread of EVD. Education and awareness programs cannot be a substitute for traditional interventions, but they can augment these efforts by preventing transmission within the community and ensuring the cases and fatalities are reported promptly. As response efforts are implemented to increase the capability to isolate and safely bury cases, social mobilization efforts can help to make these efforts as effective as possible.
The authors have declared that no competing interests exist.
The incubation time (TiE) was drawn from the incubation time distribution. For fatalities, TiF was drawn from the time until death distribution. For survivors, TiR was drawn from the time until recovery distribution.
Change in awareness over time is shown for values of social mobilization ranging from 0.0 to 0.1.
Scenario
p0
α
Y0
TM
η
1: Extrapolation from early epidemic data assuming an increase in ETU capacity and no behavior change
0.310
0.0
0.15
0
0.00
2: All data fit assuming an increase in ETU capacity and no behavior change
0.335
0.0
0.30
0
0.00
3: All data fit assuming an increase in ETU capacity and behavior change
0.305
0.7
0.10
42
0.06